parmed.amber.ChamberParm
========================

.. currentmodule:: parmed.amber

.. autoclass:: ChamberParm

   
   .. automethod:: __init__

   
   .. rubric:: Methods

   .. autosummary::
   
      ~ChamberParm.__init__
      ~ChamberParm.add_atom
      ~ChamberParm.add_atom_to_residue
      ~ChamberParm.add_flag
      ~ChamberParm.assign_bonds
      ~ChamberParm.copy
      ~ChamberParm.createSystem
      ~ChamberParm.delete_flag
      ~ChamberParm.fill_LJ
      ~ChamberParm.from_rawdata
      ~ChamberParm.from_structure
      ~ChamberParm.get_box
      ~ChamberParm.get_coordinates
      ~ChamberParm.has_1012
      ~ChamberParm.has_NBFIX
      ~ChamberParm.id_format
      ~ChamberParm.initialize_topology
      ~ChamberParm.is_changed
      ~ChamberParm.join_dihedrals
      ~ChamberParm.load_atom_info
      ~ChamberParm.load_dataframe
      ~ChamberParm.load_pointers
      ~ChamberParm.load_rst7
      ~ChamberParm.load_structure
      ~ChamberParm.omm_add_constraints
      ~ChamberParm.omm_angle_force
      ~ChamberParm.omm_bond_force
      ~ChamberParm.omm_cmap_force
      ~ChamberParm.omm_dihedral_force
      ~ChamberParm.omm_gbsa_force
      ~ChamberParm.omm_improper_force
      ~ChamberParm.omm_nonbonded_force
      ~ChamberParm.omm_out_of_plane_bend_force
      ~ChamberParm.omm_pi_torsion_force
      ~ChamberParm.omm_rb_torsion_force
      ~ChamberParm.omm_set_virtual_sites
      ~ChamberParm.omm_stretch_bend_force
      ~ChamberParm.omm_torsion_torsion_force
      ~ChamberParm.omm_trigonal_angle_force
      ~ChamberParm.omm_urey_bradley_force
      ~ChamberParm.parse
      ~ChamberParm.prune_empty_terms
      ~ChamberParm.ptr
      ~ChamberParm.rdparm
      ~ChamberParm.rdparm_old
      ~ChamberParm.rdparm_slow
      ~ChamberParm.recalculate_LJ
      ~ChamberParm.rediscover_molecules
      ~ChamberParm.remake_parm
      ~ChamberParm.save
      ~ChamberParm.set_version
      ~ChamberParm.split
      ~ChamberParm.strip
      ~ChamberParm.to_dataframe
      ~ChamberParm.unchange
      ~ChamberParm.update_dihedral_exclusions
      ~ChamberParm.view_as
      ~ChamberParm.visualize
      ~ChamberParm.write_cif
      ~ChamberParm.write_parm
      ~ChamberParm.write_pdb
      ~ChamberParm.write_psf
      ~ChamberParm.write_rst7
   
   

   
   
   .. rubric:: Attributes

   .. autosummary::
   
      ~ChamberParm.ANGLE_FORCE_GROUP
      ~ChamberParm.BOND_FORCE_GROUP
      ~ChamberParm.CMAP_FORCE_GROUP
      ~ChamberParm.DIHEDRAL_FORCE_GROUP
      ~ChamberParm.IMPROPER_FORCE_GROUP
      ~ChamberParm.NONBONDED_FORCE_GROUP
      ~ChamberParm.OUT_OF_PLANE_BEND_FORCE_GROUP
      ~ChamberParm.PI_TORSION_FORCE_GROUP
      ~ChamberParm.RB_TORSION_FORCE_GROUP
      ~ChamberParm.STRETCH_BEND_FORCE_GROUP
      ~ChamberParm.TORSION_TORSION_FORCE_GROUP
      ~ChamberParm.TRIGONAL_ANGLE_FORCE_GROUP
      ~ChamberParm.UREY_BRADLEY_FORCE_GROUP
      ~ChamberParm.amoeba
      ~ChamberParm.angles_inc_h
      ~ChamberParm.angles_without_h
      ~ChamberParm.bonds_inc_h
      ~ChamberParm.bonds_without_h
      ~ChamberParm.box
      ~ChamberParm.box_vectors
      ~ChamberParm.chamber
      ~ChamberParm.combining_rule
      ~ChamberParm.coordinates
      ~ChamberParm.dihedrals_inc_h
      ~ChamberParm.dihedrals_without_h
      ~ChamberParm.has_cmap
      ~ChamberParm.positions
      ~ChamberParm.topology
      ~ChamberParm.velocities
      ~ChamberParm.view