All modules for which code is available
- parmed.amber._amberparm
- parmed.amber._chamberparm
- parmed.amber._tinkerparm
- parmed.amber.amberformat
- parmed.amber.asciicrd
- parmed.amber.mask
- parmed.amber.mdin.cntrl
- parmed.amber.mdin.ewald
- parmed.amber.mdin.mdin
- parmed.amber.mdin.pb
- parmed.amber.mdin.qmmm
- parmed.amber.netcdffiles
- parmed.amber.offlib
- parmed.amber.parameters
- parmed.amber.readparm
- parmed.amber.titratable_residues
- parmed.charmm.charmmcrds
- parmed.charmm.parameters
- parmed.charmm.psf
- parmed.exceptions
- parmed.formats.mol2
- parmed.formats.pdb
- parmed.formats.pdbx.PdbxContainers
- parmed.formats.pdbx.PdbxReader
- parmed.formats.pdbx.PdbxWriter
- parmed.formats.pqr
- parmed.formats.psf
- parmed.formats.registry
- parmed.formats.sdf
- parmed.geometry
- parmed.gromacs.gromacsgro
- parmed.gromacs.gromacstop
- parmed.modeller.residue
- parmed.namd.namdbinfiles
- parmed.openmm.parameters
- parmed.openmm.reporters
- parmed.openmm.topsystem
- parmed.openmm.utils
- parmed.openmm.xmlfile
- parmed.parameters
- parmed.periodic_table
- parmed.rdkit.rdkit
- parmed.residue
- parmed.rosetta.pose
- parmed.scripts
- parmed.structure
- parmed.symmetry
- parmed.tinker.parameterfile
- parmed.tinker.system
- parmed.tinker.tinkerfiles
- parmed.tinker.topologyobjects
- parmed.tools.actions
- parmed.tools.add1264
- parmed.tools.addljtype
- parmed.tools.argumentlist
- parmed.tools.changeradii
- parmed.tools.checkvalidity
- parmed.tools.coarsegrain
- parmed.tools.exceptions
- parmed.tools.gui.guiactions
- parmed.tools.gui.guifiletools
- parmed.tools.gui.guitools
- parmed.tools.logos
- parmed.tools.parmed_cmd
- parmed.tools.parmlist
- parmed.tools.simulations.openmm
- parmed.tools.simulations.sanderapi
- parmed.topologyobjects
- parmed.unit.basedimension
- parmed.unit.baseunit
- parmed.unit.mymatrix
- parmed.unit.prefix
- parmed.unit.quantity
- parmed.unit.unit
- parmed.unit.unit_math
- parmed.utils
- parmed.utils.decorators
- parmed.utils.fortranformat.FortranRecordReader
- parmed.utils.fortranformat.FortranRecordWriter
- parmed.utils.fortranformat.config
- parmed.utils.io
- parmed.utils.netcdf
- parmed.utils.pairlist
- parmed.utils.pandautils
- parmed.utils.six
- parmed.utils.timer
- parmed.vec3